Mobile Menu Button

Hospital Cost Reporting

Overview

The Medicare Cost Report is an annual financial and statistical report submitted by hospitals to CMS. South Dakota Medicaid uses the cost report to develop reimbursement methodologies, establish payment rates, calculate cost settlements, and ensure Medicaid payments reasonably reflect hospital costs.

Hospital Provider Requirements

Hospitals enrolled in SD Medicaid are required to submit Medicare Cost Report and related financial documentation to Provider Reimbursement & Audits.

Required submission materials include:

  • Complete Medicare Cost Report data submitted to DSSFinancePRA@state.sd.us within five months of the hospital’s fiscal year end
  • Revenue code crosswalk linking charges to cost report line items

Critical Access Hospitals

Peer Group 1

  • Rate Development and Updates

Medicare Cost Reports are used to support the development and maintenance of Critical Access Hospital reimbursement methodologies. Cost report data is used to establish hospital-specific cost-to-charge ratios for payment for peer group 1 hospitals.

  • Inpatient hospital services transitioned from the MS-DRG methodology to a percent-of-charge reimbursement methodology.
  • Outpatient hospital services continue to be reimbursed using a percent-of-charge reimbursement methodology.
  • Annual rate reviews are designed to maintain reimbursement at no less than 100% of allowable Medicaid costs for combined inpatient and outpatient services.
  • Hospital-specific Payment-to-Cost Ratio (PCR) ceilings are evaluated annually. A hospital's PCR ceiling may remain the same or decrease based on annual cost report review but will not increase.
  • Hospital-specific reimbursement rates are reviewed annually using accepted Medicare Cost Report data and updated, as applicable, following the annual review process in accordance with DSS program timelines.

Peer Group 2

  • Inpatient hospital services are reimbursed at 95% of billed charges.
  • Outpatient hospital services are reimbursed at 90% of billed charges.
  • Cost reports are reviewed annually to monitor cost coverage levels.
  • Reimbursement methodology remains consistent with the established peer group structure.

Cost Settlements

Cost reports are used to reconcile interim Medicaid payments with allowable Medicaid costs. Following review and acceptance of the Medicare Cost Report, DSS calculates cost settlements where applicable to determine whether additional reimbursement is due based on applicable reimbursement methodologies.

  • Results are reviewed and approved by program staff.
  • Final rate impacts and/or settlement results are issued to the provider for review and, when applicable, signature.
  • Providers have 30 days to respond or request clarification.
  • If no response is received, results are finalized according to program timelines.
  • Once payment is issued, settlements are considered final.

Rate Development & Calculation Principles

To ensure consistent, accurate, and transparent reimbursement methodologies, the Department follows standardized processes when developing hospital payment rates and performing reimbursement analyses.

During rate development, the Department:

  • Maps hospital revenue codes to the appropriate Medicare Cost Report cost centers using provider-submitted or standardized crosswalks.
  • Uses hospital-specific cost-to-charge ratios and other Medicare Cost Report data to estimate allowable costs.
  • Analyzes Medicaid claims and hospital cost data to evaluate reimbursement adequacy and cost coverage.
  • Calculates hospital-specific reimbursement percentages and prospective payment rates using approved methodologies for peer group 1.
  • Performs calculations using standardized workbooks and quality review procedures to ensure consistency across providers.
  • Reviews results for accuracy before finalizing reimbursement rates or settlement calculations.

Amended Cost Reports

Amended cost reports may be submitted to correct material errors or reflect applicable changes before final settlement has been completed.

Acute Hospitals

APR-DRG Outlier Payments

Medicare Cost Reports provide hospital-specific cost-to-charge ratios used in the calculation of inpatient outlier payments under applicable Medicaid reimbursement methodologies.

Questions or Submissions

DSSFinancePRA@state.sd.us


City Hospital Name Peer Group CY24 Hospital Payment to Cost Ratio CY25 Total Payments CY25  Medicaid Cost CY25 Hospital service payment to cost difference CY25 Hospital Payment to Cost Ratio
Armour Douglas County Memorial Hosp   2 124.20%  $460,370  $303,130  $157,240.00 151.87%
Bowdle Bowdle Hospital                2 148.50%  $249,013  $146,454  $102,559.00 170.03%
Britton Marshall County Healthcare Ctr 2 188.80%  $340,289  $210,238  $130,051.00 161.86%
Burke Community Memorial Hospital - Burke 2 132.60%  $475,495  $388,202  $87,293.00 122.49%
Canton Sanford Canton Inwood Medical  2 236.10%  $1,118,875  $467,819  $651,056.00 239.17%
Chamberlain Sanford Chamberlain Medical Ce 1 96.00%  $4,279,604  $4,706,327  $(426,723.00) 90.93%
Clear Lake Sanford Clear Lake Medical Cen 2 150.70%  $663,866  $369,217  $294,649.00 179.80%
Custer Custer Regional Hospital       2 239.50%  $2,743,322  $960,999  $1,782,323.00 285.47%
De Smet Avera De Smet Memorial Hospita 2 195.60%  $622,946  $289,470  $333,476.00 215.20%
Deadwood Lead Deadwood Regional Hosp    1 111.40%  $1,354,406  $909,394  $445,012.00 148.93%
Dell Rapids Avera Dells Area Hospital      2 241.10%  $914,938  $340,320  $574,618.00 268.85%
Eureka Eureka Community Health Serv   2 75.30%  $460,896  $458,217  $2,679.00 100.58%
Faulkton Faulkton Hospital              2 98.80%  $525,024  $362,037  $162,987.00 145.02%
Flandreau Avera Flandreau Hospital       2 198.10%  $1,313,322  $563,314  $750,008.00 233.14%
Freeman Freeman Medical Center         2 180.90%  $679,199  $335,090  $344,109.00 202.69%
Gettysburg Avera Missouri River Health    2 133.80%  $427,450  $250,587  $176,863.00 170.58%
Gregory Avera Gregory Hospital         1 100.50%  $820,812  $786,894  $33,918.00 104.31%
Hot Springs Fall River Hospital            2 152.90%  $2,081,578  $1,066,560  $1,015,018.00 195.17%
Huron Huron Regional Medical Center  1 87.10%  $5,178,430  $4,963,832  $214,598.00 104.32%
Madison Madison Regional Health System 1 86.70%  $1,240,425  $1,449,578  $(209,153.00) 85.57%
Martin Bennett County Hospital        1 100.00%  $2,298,412  $2,233,203  $65,209.00 102.92%
Milbank Avera Milbank 1 125.70%  $900,321  $649,637  $250,684.00 138.59%
Miller Avera Hand County Mem Hosp     2 176.10%  $548,400  $260,417  $287,983.00 210.59%
Mitchell Avera Queen Of Peace Hosp      1 145.80%  $9,659,432  $5,503,336  $4,156,096.00 175.52%
Mobridge Mobridge Regional Hospital     1 100.40%  $3,867,292  $4,360,670  $(493,378.00) 88.69%
Parkston Avera St Benedict Health Ctr   1 122.90%  $1,073,397  $551,238  $522,159.00 194.72%
Philip Hans P Peterson Memorial Hosp  2 153.00%  $995,792  $568,162  $427,630.00 175.27%
Platte Platte Health Center Avera     2 140.80%  $702,641  $373,277  $329,364.00 188.24%
Redfield Community Memorial Hospital - Redfield 2 155.80%  $1,400,893  $821,782  $579,111.00 170.47%
Scotland Landmann Jungman Memorial Hos  2 128.60%  $356,303  $316,953  $39,350.00 112.42%
Sisseton Coteau Des Prairies Hospital   1 101.20%  $2,851,159  $2,385,484  $465,675.00 119.52%
Sturgis Monument Health Sturgis Hospi  1 143.90%  $2,309,298  $1,530,035  $779,263.00 150.93%
Tyndall St Michaels Hospital           1 99.80%  $487,553  $403,550  $84,003.00 120.82%
Vermillion Sanford Vermillion Hospital    1 102.40%  $2,341,311  $1,856,519  $484,792.00 126.11%
Viborg Pioneer Memorial Hospital      2 222.40%  $696,457  $284,401  $412,056.00 244.89%
Wagner Wagner Community Memorial Hosp 1 100.80%  $4,049,805  $3,239,632  $810,173.00 125.01%
Webster Sanford Hospital Webster       2 195.70%  $1,220,840  $614,363  $606,477.00 198.72%
Wessington Springs Avera Weskota Memorial Hospita 2 176.30%  $423,400  $164,099  $259,301.00 258.02%
Winner Winner Regional Healthcare     1 74.40%  $2,378,465  $2,544,520  $(166,055.00) 93.47%
Total  $64,511,431  $47,988,957  $16,522,474.00 134%